PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 912814
Common NameARALYDRAFT_912814
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 270aa    MW: 28107.9 Da    PI: 4.6529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
912814genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-05137158223
              EETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
              +C++Cg+ F ++     H+r H
   912814 137 VCHICGRGFGSWKAVFGHMRAH 158
              6*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MTSNPEKTKV DDVEEDERED SDEQWNDEET DTREIVLGLP ALSISSRIFV DSSSVAVVEE  60
DVEKARLNEQ AVLAAGLVLA AAEEAVMKGV NEGSGSGGKK KSRPRTSTKT DDKADGSGKK  120
PKKKSSELTH PPKGPPVCHI CGRGFGSWKA VFGHMRAHKD RNYQGFLPPP TFSAAAERFS  180
IPGRNSAFAI VTAGGGSSGG LAGGGGSSGG CPASAGGDAW GCEGGKGAAI DLNVDPVEEV  240
EEATESGYIA KFDLNKSPPK DEEEEDKAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867063.10.0hypothetical protein ARALYDRAFT_912814
TrEMBLD7MCE80.0D7MCE8_ARALL; Putative uncharacterized protein
STRINGscaffold_700556.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-66C2H2 family protein